Bioinformatic Services

Genomics Tools
- GeneSpring
- dChip
- Affymetrix Gene Expression Console
- GCOS
- TM4
- Bioconductor
- GEXPAS (developed in house)
Proteomic Tools
- Protein Forest
- Protein Pilot
- Mascot
- SEQuest
Statistical Packages
- R
- SAS
- SPSS
- MATLab
Systems Biology Analysis
- Pathway Analysis
- Ingenuity, GeneGo, Pathway Assist, and Bioconductor
- Geneset Enrichment Analysis
- Interactive Network analysis using Cytoscape
- Biomarker Prediction using GEXBio (developed in house)
The Bioinformatics Core will be the central portal of the Proteomics Core that will provide DF/HCC investigators with access to phenotypically annotated proteomics data as well as a large set of analytic procedures (i.e. unsupervised and supervised learning techniques, statistical analysis tools, automated clustering and classification procedures, pathway analysis and generation tools, protein identification database tools, data-visualization tools, annotation tools) with which to explore the data sets for further hypothesis generation.
Bioinformatics Analyses Offered
- Personalized consulting
- Customized data analysis and interpretation
- Web-based bioinformatics tools
- Comprehensive and innovative Bioinformatics and visualization tools
- Comprehensive annotation tools
- Identification of Global Relationships
- Incorporation of Biological Knowledge
- Pathway Analysis
- miRNA Data Analysis
- CGH and Genotype Array Analysis
- Protein and DNA Sequence Analysis
- Development of Prediction Models using Bayesian, SVM, ANN, KNN Algorithms
- Publication ready figures
- The Bioinformatics Core is also responsible for software support and development.
